OK, so here's what I've figured out. I have an '04 Bonnie here and I plugged the procom box into it set on #1 and it fired right up. So, the box is good but for some reason it won't fire my bike.
So a little back story is in order now. Earlier this year the coil on my bike went out and with nologys back ordered for months I found a guy on ebay that had a box of pvl coils he thought would work on the new bonnies. The part numbers didn't match up but they looked the same so for 20 bucks I gave it a shot and it worked. So on a hunch I took the factory gill coil from the '04 put it on my bike with the new procom box and boom, fired right up. Swapped back to the pvl coil and no spark. So for whatever reason, the ebay pvl coil will work with the factory cdi but not the procom.
The reason I have the '04 here is that I bought it the other night. It has a bad misfire itself. Because of that and a baby on the way I got it for a good price. The previous owner put a procom box on it hoping it would fix it but it didn't so now I have two bikes, two good procom boxes and the good factory box off the '04 which means that now I can give bonefide's stock box back to him.
Wow, I hope all of this makes some kind of sense.